Software

msBayes

 

Hicker-lab Github link (organization)

 

R scripts for use with generic or msBayes ABC (Contributors = Wen Huang and Mike Hickerson)

Generic simulation testing of ABC conditions using PODS (pseudo-observed data sets)

simulation testing of MTML-MSBAYES conditions using PODS (pseudo-observed data sets)
Shell script (run on command line)
R script (runs within the above shell script)

Categorical model choice with ABC (e.g. testing for migration vs isolation across taxon-pairs or estimating any other discrete integer parameter)

Plotting N-dimensional euclidian distances between observed summary statistic vector and accepted simulated summary statistic vectors

 

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